recipe stringtie

StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts.

Homepage:

https://ccb.jhu.edu/software/stringtie/

Developer docs:

https://github.com/gpertea/stringtie

License:

MIT / MIT

Recipe:

/stringtie/meta.yaml

Links:

biotools: StringTie, usegalaxy-eu: stringtie, doi: 10.1038/nbt.3122, doi: 10.1038/nprot.2016.095, doi: 10.1186/s13059-019-1910-1

package stringtie

(downloads) docker_stringtie

Versions:
2.2.1-22.2.1-12.2.1-02.2.0-12.2.0-02.1.7-02.1.6-02.1.5-12.1.5-0

2.2.1-22.2.1-12.2.1-02.2.0-12.2.0-02.1.7-02.1.6-02.1.5-12.1.5-02.1.4-02.1.2-12.1.2-02.1.1-02.0-01.3.6-01.3.5-01.3.4-11.3.4-01.3.3-41.3.3-31.3.3-21.3.3b-11.3.3b-01.3.0-21.3.0-11.3.0-01.2.4-21.2.4-11.2.4-01.2.3-01.2.2-21.2.2-11.2.0-11.2.0-01.1.2-01.1.1-01.1.0-01.0.4-11.0.4-01.0.3-11.0.3-01.0.1-00.97-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install stringtie

and update with:

conda update stringtie

or use the docker container:

docker pull quay.io/biocontainers/stringtie:<tag>

(see stringtie/tags for valid values for <tag>)

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