recipe suchtree

A python library for doing fast, thread-safe computations on phylogenetic trees

Homepage:

https://github.com/ryneches/SuchTree/

Documentation:

https://github.com/ryneches/SuchTree/blob/master/README.md

License:

BSD / BSD

Recipe:

/suchtree/meta.yaml

Links:

biotools: suchtree, doi: 10.21105/joss.00678

package suchtree

versions:

1.2-1,  1.2-0

depends dendropy:

depends libgcc:

>=13

depends numpy:

>=1.21,<3

depends numpy:

>=2.0

depends pandas:

>=2.1

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends scipy:

requirements:

additional platforms:

linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install suchtree

and update with::

   mamba update suchtree

To create a new environment, run:

mamba create --name myenvname suchtree

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/suchtree:<tag>

(see `suchtree/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/suchtree/README.html)