recipe super-focus

SUPER-FOCUS: A tool for agile functional analysis of shotgun metagenomic data

Homepage:

https://edwards.sdsu.edu/SUPERFOCUS

Developer docs:

https://github.com/metageni/SUPER-FOCUS

License:

GPL / GPL-3.0

Recipe:

/super-focus/meta.yaml

package super-focus

Versions:

1.6-1,  1.6-0,  1.5-0,  1.4.1-0,  1.4-0,  1.0-0,  0.35-0,  0.34-1,  0.34-0, 

1.6-1,  1.6-0,  1.5-0,  1.4.1-0,  1.4-0,  1.0-0,  0.35-0,  0.34-1,  0.34-0,  0.33-0,  0.32-1,  0.32-0,  0.31-0,  0.30-0,  0.29-0

Depends:

• blast

• diamond

• kmer-jellyfish

• mmseqs2

• numpy >=1.12.1

• python >=3

• rapsearch

• scipy

• setuptools

• setuptools_scm

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install super-focus

and update with:

conda update super-focus

or use the docker container:

docker pull quay.io/biocontainers/super-focus:<tag>

(see super-focus/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/super-focus/README.html)