recipe surpyvor

Evaluating, merging and plotting SV vcf files

Homepage

https://github.com/wdecoster/surpyvor

License

MIT / MIT License

Recipe

/surpyvor/meta.yaml

Links

doi: 10.1101/gr.244939.118

package surpyvor

Versions

0.11.0-0,  0.10.0-0,  0.8.1-1,  0.8.1-0,  0.6.0-1,  0.6.0-0,  0.5.0-1,  0.5.0-0

Depends

• bcftools

• cyvcf2

• htslib

• matplotlib-base

• matplotlib-venn

• numpy

• python >=3

• survivor

• upsetplot

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install surpyvor

and update with:

conda update surpyvor

or use the docker container:

docker pull quay.io/biocontainers/surpyvor:<tag>

(see surpyvor/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/surpyvor/README.html)