recipe svim

SVIM is a structural variant caller for long reads.

Homepage:

https://github.com/eldariont/svim

License:

GPL / GPL-3.0

Recipe:

/svim/meta.yaml

package svim

Versions:

1.4.2-0,  1.4.1-0,  1.4.0-0,  1.3.1-0,  1.3.0-0,  1.2.0-0,  1.1.1-0,  1.1.0-0,  1.0.0-0, 

1.4.2-0,  1.4.1-0,  1.4.0-0,  1.3.1-0,  1.3.0-0,  1.2.0-0,  1.1.1-0,  1.1.0-0,  1.0.0-0,  0.5.0-0,  0.4.4-0,  0.4.3-0,  0.4.2-0,  0.4.1-0

Depends:

• matplotlib-base

• minimap2

• networkx

• ngmlr

• numpy

• pysam >=0.15

• python >=3.6

• samtools

• scipy

Required By:

• duet

• lorikeet-genome

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install svim

and update with:

conda update svim

or use the docker container:

docker pull quay.io/biocontainers/svim:<tag>

(see svim/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/svim/README.html)