recipe svtk

Utilities for consolidating, filtering, resolving, and annotating structural variants.

Homepage:

https://github.com/talkowski-lab/svtk

License:

MIT / MIT

Recipe:

/svtk/meta.yaml

package svtk

Versions:

0.0.20190615-3,  0.0.20190615-2,  0.0.20190615-1,  0.0.20190615-0

Depends:

• boto3

• libgcc-ng >=12

• natsort

• numpy

• pandas

• pybedtools

• pysam >=0.11.2.2

• python >=3.10,<3.11.0a0

• python_abi 3.10.* *_cp310

• scikit-learn

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install svtk

and update with:

conda update svtk

or use the docker container:

docker pull quay.io/biocontainers/svtk:<tag>

(see svtk/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/svtk/README.html)