recipe swarm

A robust and fast clustering method for amplicon-based studies.

Homepage:

https://github.com/torognes/swarm

License:

Affero GPL

Recipe:

/swarm/meta.yaml

Links:

biotools: swarm, doi: 10.7717/peerj.593

package swarm

Versions:

3.1.0-2,  3.1.0-1,  3.1.0-0,  3.0.0-0,  2.2.2-2,  2.2.2-1,  2.2.2-0,  2.1.13-0,  2.1.10-0, 

3.1.0-2,  3.1.0-1,  3.1.0-0,  3.0.0-0,  2.2.2-2,  2.2.2-1,  2.2.2-0,  2.1.13-0,  2.1.10-0,  2.1.5-0,  1.2.19-1,  1.2.19-0

Depends:

• libgcc-ng >=10.3.0

• libstdcxx-ng >=10.3.0

• python >=3

• python-igraph

Required By:

• lotus2

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install swarm

and update with:

conda update swarm

or use the docker container:

docker pull quay.io/biocontainers/swarm:<tag>

(see swarm/tags for valid values for <tag>)

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