recipe swiftlink

A multipoint parametric linkage analysis tool for large consanguineous pedigrees and is primarily targeted at pedigrees that cannot be analysed by a Lander-Green algorithm based program, i.e. many markers, but larger pedigrees.

Homepage:

https://github.com/ajm/swiftlink

License:

GPLv3

Recipe:

/swiftlink/meta.yaml

package swiftlink

versions:

1.0-2,  1.0-1,  1.0-0

depends gsl:

>=2.2.1,<2.3.0a0

depends libgcc-ng:

>=4.9

depends libstdcxx-ng:

>=4.9

depends openblas:

>=0.2.20,<0.2.21.0a0

depends openmp:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install swiftlink

and update with::

   mamba update swiftlink

To create a new environment, run:

mamba create --name myenvname swiftlink

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/swiftlink:<tag>

(see `swiftlink/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

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