recipe swipe

Tool for performing rapid local alignment searches in amino acid or nucleotide sequence databases. It is a highly optimized implementation of the Smith-Waterman algoritm using SIMD parallel computing technology available on common CPUs.

Homepage

http://dna.uio.no/swipe

Developer docs

https://github.com/torognes/swipe

License

GPL / AGPL-3.0

Recipe

/swipe/meta.yaml

Links

biotools: swipe, doi: 10.1186/1471-2105-12-221

package swipe

(downloads) docker_swipe

Versions

2.1.0-0, 2.0.12-1, 2.0.12-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install swipe

and update with:

conda update swipe

or use the docker container:

docker pull quay.io/biocontainers/swipe:<tag>

(see swipe/tags for valid values for <tag>)