recipe symbiontscreener

Symbiont-Screener is a reference-free approach to identifying high-confidence host's long reads from symbionts and contaminants and overcoming the low sequencing accuracy according to a trio-based screening model.

Homepage:

https://github.com/BGI-Qingdao/Symbiont-Screener

License:

GPL-3.0-only

Recipe:

/symbiontscreener/meta.yaml

package symbiontscreener

Versions:

1.0.0-1,  1.0.0-0

Depends:

• kmer-jellyfish

• libgcc-ng >=12

• libstdcxx-ng >=12

• libzlib >=1.2.13,<1.3.0a0

• meryl

• numpy

• pandas

• plotly

• seqkit

• zlib

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install symbiontscreener

and update with:

conda update symbiontscreener

or use the docker container:

docker pull quay.io/biocontainers/symbiontscreener:<tag>

(see symbiontscreener/tags for valid values for <tag>)

Download stats

Link to this page

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