recipe t-coffee

A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence

Homepage

https://github.com/cbcrg/tcoffee

License

GPL

Recipe

/t-coffee/meta.yaml

Links

doi: 10.1006/jmbi.2000.4042

package t-coffee

Versions

13.39.0.d675aed-2,  13.39.0.d675aed-1,  13.39.0.d675aed-0,  12.00.7fb08c2-2,  12.00.7fb08c2-1,  12.00.7fb08c2-0,  11.00.8cbe486-0

Depends

• blast

• clustalo

• clustalw

• consan

• dca

• dialign-tx 1.0.2.*

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• mafft 7.310.*

• muscle

• mustang 3.2.3.*

• pasta

• phylip

• poa 2.0.*

• prank

• ruby

• tmalign

• viennarna 2.1.9.*

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install t-coffee

and update with:

conda update t-coffee

or use the docker container:

docker pull quay.io/biocontainers/t-coffee:<tag>

(see t-coffee/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/t-coffee/README.html)