- recipe tandemtwister
Detection of interleaved and embedded tandem repeats from long reads
- Homepage:
- License:
BSD / BSD-3-Clause-Non-Commercial
- Recipe:
TandemTwister is a tool designed for the detection of interleaved and embedded tandem repeats from long reads, facilitating advanced genomic analysis. This software is licensed for NON-COMMERCIAL USE ONLY under the BSD 3-Clause Non-Commercial License. For commercial licensing inquiries, please contact the author.
- package tandemtwister¶
- versions:
0.2.0-0,0.1.0-0- depends _openmp_mutex:
>=4.5- depends fmt:
11.2.0- depends fmt:
>=11.2.0,<11.3.0a0- depends htslib:
1.22.1- depends htslib:
>=1.22.1,<1.23.0a0- depends libdeflate:
>=1.25,<1.26.0a0- depends libgcc:
>=13- depends libgomp:
- depends libstdcxx:
>=13- depends mlpack:
4.5.0- depends spdlog:
>=1.15.3,<1.16.0a0- requirements:
- additional platforms:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install tandemtwister and update with:: mamba update tandemtwister
To create a new environment, run:
mamba create --name myenvname tandemtwister
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/tandemtwister:<tag> (see `tandemtwister/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/tandemtwister/README.html)
