recipe taranis

Pipeline for wg/cgMLST allele calling

Homepage:

https://github.com/BU-ISCIII/taranis

License:

GPLv3

Recipe:

/taranis/meta.yaml

Taranis is a allele calling software for cg/wgMLST analysis using bacterial strain assemblies and an available cg/wgMLST schema.

package taranis

Versions:

2.0.1-0,  2.0.0edge-0

Depends:

• biopython >=1.72

• blast >=2.9

• mash >=2

• numpy >=1.20.3

• openpyxl >=3.0.7

• pandas >=1.2.4

• plotly >=5.0.0

• prodigal >=2.6.3

• progressbar >=2.5

• prokka >=1.14

• python >=3.6

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install taranis

and update with:

conda update taranis

or use the docker container:

docker pull quay.io/biocontainers/taranis:<tag>

(see taranis/tags for valid values for <tag>)

Download stats

Link to this page

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