recipe taranys

cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.

Homepage:

https://github.com/BU-ISCIII/taranys

License:

GPL-3.0-or-later

Recipe:

/taranys/meta.yaml

package taranys

versions:

3.0.1-0

depends bio:

>=1.6.0

depends blast:

>=2.9

depends click:

>=8.1.3

depends igraph:

>=0.9.8

depends leidenalg:

>=0.9.1

depends mafft:

>=7.505

depends mash:

>=2

depends plotly:

>=5.11.0

depends poetry:

>=1.7.1

depends prodigal:

>=2.6.3

depends prokka:

>=1.14

depends python:

>=3.10

depends python-kaleido:

>=0.2.1

depends questionary:

>=1.10.0

depends rich:

>=13.4.1

depends scikit-learn:

>=1.2.0

depends six:

>=1.16.0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install taranys

and update with::

   mamba update taranys

To create a new environment, run:

mamba create --name myenvname taranys

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/taranys:<tag>

(see `taranys/tags`_ for valid values for ``<tag>``)

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