recipe taxoniumtools

Taxonium is a tool for exploring trees, including those with millions of nodes. This tool generates files compatible with viewing in Taxonium from inputs like Newick and UShER files.

Homepage:

https://github.com/theosanderson/taxonium

License:

GPL-3.0-only

Recipe:

/taxoniumtools/meta.yaml

package taxoniumtools

(downloads) docker_taxoniumtools

versions:

2.1.17-0

depends alive-progress:

depends biopython:

<=1.81

depends docker-py:

depends google-api-python-client:

depends orjson:

depends pandas:

depends protobuf:

<4

depends psutil:

depends python:

>=3.8

depends treeswift:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install taxoniumtools

and update with::

   mamba update taxoniumtools

To create a new environment, run:

mamba create --name myenvname taxoniumtools

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/taxoniumtools:<tag>

(see `taxoniumtools/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/taxoniumtools/README.html)