recipe taxsbp

TaxSBP: taxonomic structured bin packing

Homepage:

https://github.com/pirovc/taxsbp

License:

MIT / MIT License

Recipe:

/taxsbp/meta.yaml

Links:

doi: 10.1093/bioinformatics/btaa458

Implementation of the approximation algorithm for the hierarchically structured bin packing problem adapted for the NCBI Taxonomy database

package taxsbp

(downloads) docker_taxsbp

versions:

1.1.1-0,  1.1.0-0,  1.0.0-0,  0.1.2-0,  0.1.1-0

depends binpacking:

1.4.3

depends pylca:

1.0.0

depends python:

>=3.5

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install taxsbp

and update with::

   mamba update taxsbp

To create a new environment, run:

mamba create --name myenvname taxsbp

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/taxsbp:<tag>

(see `taxsbp/tags`_ for valid values for ``<tag>``)

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Link to this page

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