recipe telr

A a fast non-reference transposable element (TE) detector from long read sequencing data (PacBio or Oxford Nanopore).

Homepage:

https://github.com/bergmanlab/telr

License:

BSD

Recipe:

/telr/meta.yaml

package telr

Versions:

0.2-2,  0.2-1,  0.2-0

Depends:

• bcftools 1.9.*

• bedtools

• biopython

• flye

• minimap2

• ngmlr

• numpy

• pandas >=1.0.0

• pip

• pysam >=0.15

• python >=3.6

• repeatmasker 4.0.7.*

• rmblast 2.6.0.*

• samtools 1.9.*

• seqtk

• sniffles 1.0.12.*

• wtdbg >=2.5

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install telr

and update with:

conda update telr

or use the docker container:

docker pull quay.io/biocontainers/telr:<tag>

(see telr/tags for valid values for <tag>)

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Link to this page

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