recipe tepid

TEPID uses paired-end illumina sequencing reads to identify novel TE variants.

Homepage

https://github.com/ListerLab/TEPID

License

GPL

Recipe

/tepid/meta.yaml

package tepid

(downloads) docker_tepid

Versions

0.8-1, 0.8-0, 0.7-0

Depends bedtools

2.25.0

Depends bowtie2

Depends libgcc-ng

>=4.9

Depends libgfortran

1.0

Depends nose

Depends numpy

1.9.2

Depends pandas

Depends pybedtools

Depends pysam

<0.9,>0.8

Depends python

>=2.7,<2.8.0a0

Depends samblaster

Depends samtools

1.2

Depends yaha

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install tepid

and update with:

conda update tepid

or use the docker container:

docker pull quay.io/biocontainers/tepid:<tag>

(see tepid/tags for valid values for <tag>)