recipe tetyper

Typing of a specific transposable element (TE) of interest from paired-end sequencing data.

Homepage:

https://github.com/aesheppard/TETyper

License:

GPL-3.0

Recipe:

/tetyper/meta.yaml

Links:

doi: 10.1099/mgen.0.000232

package tetyper

Versions:

1.1-1,  1.1-0

Depends:

• bcftools

• biopython

• blast

• bwa

• pysam

• python

• pyvcf

• samtools

• spades

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install tetyper

and update with:

conda update tetyper

or use the docker container:

docker pull quay.io/biocontainers/tetyper:<tag>

(see tetyper/tags for valid values for <tag>)

Download stats

Link to this page

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