- recipe themis
Themis: metagenomic profiler
- Homepage:
- License:
GPL-3.0-or-later
- Recipe:
- package themis¶
- versions:
0.1.0-0- depends bzip2:
>=1.0.8,<2.0a0- depends coreutils:
- depends curl:
- depends diffutils:
- depends fastp:
- depends genome_updater:
>=0.6.4- depends genome_updater:
>=0.7.0,<0.8.0a0- depends grep:
- depends libgcc:
>=13- depends libstdcxx:
>=13- depends libzlib:
>=1.3.1,<2.0a0- depends multitax:
>=1.3.1- depends multitax:
>=1.3.2,<2.0a0- depends pandas:
>=1.2.0- depends python:
>=3.14,<3.15.0a0- depends python_abi:
3.14.* *_cp314- depends raptor:
3.*- depends raptor:
>=3.0.1,<4.0a0- depends seqan3:
>=3.3.0,<4.0a0- depends zlib:
- requirements:
- additional platforms:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install themis and update with:: mamba update themis
To create a new environment, run:
mamba create --name myenvname themis
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/themis:<tag> (see `themis/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/themis/README.html)
