- recipe tirank
A comprehensive analysis tool for prioritizing phenotypic niches in tumor microenvironment.
- Homepage:
- Documentation:
- License:
MIT
- Recipe:
- package tirank¶
- versions:
1.0.2-1,1.0.2-0,1.0.0-0,0.1.3-0- depends click:
- depends dash:
>=2.0- depends dash-bootstrap-components:
>=1.0- depends gseapy:
>=1.0- depends imbalanced-learn:
>=0.11- depends leidenalg:
- depends lifelines:
>=0.27- depends matplotlib-base:
>=3.7- depends numpy:
>=1.22,<2.0- depends openpyxl:
- depends optuna:
>=3.0- depends pandas:
>=1.5- depends pillow:
>=9.0- depends python:
>=3.9- depends python-igraph:
- depends pytorch:
>=2.0- depends scanpy:
>=1.9- depends scikit-learn:
>=1.0- depends scipy:
>=1.8- depends seaborn-base:
>=0.12- depends snakemake:
7.32.4- depends statsmodels:
>=0.14- depends timm:
0.5.4- depends torchvision:
>=0.15- requirements:
- additional platforms:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install tirank and update with:: mamba update tirank
To create a new environment, run:
mamba create --name myenvname tirank
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/tirank:<tag> (see `tirank/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/tirank/README.html)
