recipe tncomp_finder

Composite transposon finder for bacterial and archaeal genomes

Homepage:

https://github.com/danillo-alvarenga/tncomp_finder

License:

AGPL / AGPL-3.0-or-later

Recipe:

/tncomp_finder/meta.yaml

TnComp_finder is a program for the prediction of putative composite transposons in bacterial and archaeal genomes based on insertion sequence replicas in a relatively short span. It works by comparing nucleotide sequences from bacterial and archaeal genomes to a custom transposon database.

package tncomp_finder

(downloads) docker_tncomp_finder

versions:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install tncomp_finder

and update with::

   mamba update tncomp_finder

To create a new environment, run:

mamba create --name myenvname tncomp_finder

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/tncomp_finder:<tag>

(see `tncomp_finder/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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