recipe tobias

Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal

Homepage:

https://github.com/loosolab/TOBIAS/

Documentation:

https://github.com/loosolab/TOBIAS/wiki

License:

MIT

Recipe:

/tobias/meta.yaml

TOBIAS (Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal) is a collection of command-line bioinformatics tools for performing footprinting analysis on ATAC-seq data.

package tobias

Versions:

0.13.3-1,  0.13.3-0,  0.13.2-1,  0.13.2-0,  0.13.1-0,  0.13.0-0,  0.12.12-0,  0.12.11-0,  0.12.10-1, 

0.13.3-1,  0.13.3-0,  0.13.2-1,  0.13.2-0,  0.13.1-0,  0.13.0-0,  0.12.12-0,  0.12.11-0,  0.12.10-1,  0.12.10-0,  0.12.9-0,  0.12.8-0,  0.12.7-0,  0.12.6-0,  0.12.4-0,  0.12.3-0,  0.12.1-0,  0.12.0-0,  0.11.6-1,  0.11.6-0,  0.11.4-0,  0.11.3-0,  0.11.2-0,  0.11.1-0,  0.11.0-0,  0.9.0-0,  0.8.0-0,  0.7.0-0,  0.6.4-0,  0.6.1-0,  0.5.0-0

Depends:

• adjusttext

• boto3

• importlib_metadata

• kneed

• logomaker

• matplotlib-base >=2

• moods

• numpy >=1.17.5,<2.0a0

• pandas

• pybedtools

• pybigwig

• pypdf2

• pysam

• python >=3.6,<3.7.0a0

• python_abi 3.6.* *_cp36m

• pyyaml >=5.1

• scikit-learn

• scipy

• seaborn >=0.9.1

• svist4get >=1.2.24

• xgboost >=0.71

• xlsxwriter

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install tobias

and update with:

conda update tobias

or use the docker container:

docker pull quay.io/biocontainers/tobias:<tag>

(see tobias/tags for valid values for <tag>)

Download stats

Link to this page

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