recipe tobias

Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal

Homepage

https://github.com/loosolab/TOBIAS/

Documentation

https://github.com/loosolab/TOBIAS/wiki

License

MIT

Recipe

/tobias/meta.yaml

TOBIAS (Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal) is a collection of command-line bioinformatics tools for performing footprinting analysis on ATAC-seq data.

package tobias

Versions

0.11.2-0, 0.11.1-0, 0.11.0-0, 0.9.0-0, 0.8.0-0, 0.7.0-0, 0.6.4-0, 0.6.1-0, 0.5.0-0

Depends

• adjusttext

• boto3

• libgcc-ng >=7.3.0

• logomaker

• matplotlib-base >=2

• moods

• numpy >=1.14.6,<2.0a0

• pandas

• pybedtools

• pybigwig

• pypdf2

• pysam

• python >=3.6,<3.7.0a0

• python_abi 3.6.* *_cp36m

• pyyaml >=5.1

• scikit-learn

• scipy

• seaborn >=0.9.1

• svist4get 1.2.22

• xgboost >=0.71

• xlsxwriter

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install tobias

and update with:

conda update tobias

or use the docker container:

docker pull quay.io/biocontainers/tobias:<tag>

(see tobias/tags for valid values for <tag>)

Link to this page

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