recipe tomm40_wgs

TOMM40_WGS: Genotyping TOMM40’523 Poly-T Polymorphisms Using Whole-Genome Sequencing.

Homepage:

https://github.com/RushAlz/TOMM40_WGS

License:

GPL / GPL-2.0-or-later

Recipe:

/tomm40_wgs/meta.yaml

package tomm40_wgs

versions:

1.0.0-0,  0.0.1-0

depends bash:

5.2.21.*

depends pandas:

2.2.3.*

depends samtools:

1.21.*

depends snakemake-minimal:

9.3.0.*

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install tomm40_wgs

and update with::

   mamba update tomm40_wgs

To create a new environment, run:

mamba create --name myenvname tomm40_wgs

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/tomm40_wgs:<tag>

(see `tomm40_wgs/tags`_ for valid values for ``<tag>``)

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Link to this page

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