recipe tpmcalculator

TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files.

Homepage:

https://github.com/ncbi/TPMCalculator

License:

Public Domain

Recipe:

/tpmcalculator/meta.yaml

package tpmcalculator

Versions:

0.0.4-3,  0.0.4-2,  0.0.4-1,  0.0.4-0,  0.0.3-1,  0.0.3-0

Depends:

• bamtools >=2.5.1,<2.5.2.0a0

• libgcc-ng >=12

• libstdcxx-ng >=12

• libzlib >=1.2.13,<1.3.0a0

• zlib

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install tpmcalculator

and update with:

conda update tpmcalculator

or use the docker container:

docker pull quay.io/biocontainers/tpmcalculator:<tag>

(see tpmcalculator/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/tpmcalculator/README.html)