recipe tpp

The Trans-Proteomic Pipeline (TPP) is a collection of integrated tools for MS/MS proteomics developed at the Seattle Proteome Center. The Bioconda package includes the command-line versions of the TPP toolset. These programs include tools for validation (PeptideProphet, iProphet, ProteinProphet, Mayu) and quantification (XPRESS, ASAPRatio, Libra) as well as a number of parsers and converters (Out2XML, Mascot2XML, Tandem2XML, etc).

Homepage

http://tools.proteomecenter.org/wiki/index.php?title=Software:TPP

License

GPL v. 2.0 and LGPL

Recipe

/tpp/meta.yaml

package tpp

Versions

5.0.0-0

Depends

• bzip2 1.0*

• hardklor

• libgcc <=4.9

• perl 5.22.0*

• perl-findbin-libs

• perl-xml-parser

• zlib 1.2.11*

Required By

• protk

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install tpp

and update with:

conda update tpp

or use the docker container:

docker pull quay.io/biocontainers/tpp:<tag>

(see tpp/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/tpp/README.html)