transdecoder

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TransDecoder identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks.

Home https://transdecoder.github.io/
Versions 2.1.0, 3.0.1
License Broad Institute
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/transdecoder

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install transdecoder

and update with:

conda update transdecoder

docker

A Docker container is available at https://quay.io/repository/biocontainers/transdecoder.