recipe transdecoder

TransDecoder identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks.

Homepage:

https://transdecoder.github.io/

Developer docs:

https://github.com/TransDecoder/TransDecoder

License:

Broad Institute

Recipe:

/transdecoder/meta.yaml

package transdecoder

Versions:

5.7.0-0,  5.5.0-5,  5.5.0-4,  5.5.0-3,  5.5.0-2,  5.5.0-1,  5.5.0-0,  5.3.0-0,  5.2.0-0, 

5.7.0-0,  5.5.0-5,  5.5.0-4,  5.5.0-3,  5.5.0-2,  5.5.0-1,  5.5.0-0,  5.3.0-0,  5.2.0-0,  5.1.0-0,  5.0.2-0,  3.0.1-2,  3.0.1-1,  3.0.1-0,  2.1.0-5,  2.1.0-4,  2.1.0-3,  2.1.0-2,  2.1.0-1,  2.1.0-0

Depends:

• bioconductor-seqlogo

• perl >=5.32.1,<6.0a0 *_perl5

• perl-db-file

• perl-uri

• r-ggplot2

Required By:

• pasa

• dammit

• plant_tribes_assembly_post_processor

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install transdecoder

and update with:

conda update transdecoder

or use the docker container:

docker pull quay.io/biocontainers/transdecoder:<tag>

(see transdecoder/tags for valid values for <tag>)

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