- recipe transdecoder
TransDecoder identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks.
- Homepage:
- Developer docs:
- License:
Broad Institute
- Recipe:
- package transdecoder¶
-
- Versions:
5.7.0-0
,5.5.0-5
,5.5.0-4
,5.5.0-3
,5.5.0-2
,5.5.0-1
,5.5.0-0
,5.3.0-0
,5.2.0-0
,5.7.0-0
,5.5.0-5
,5.5.0-4
,5.5.0-3
,5.5.0-2
,5.5.0-1
,5.5.0-0
,5.3.0-0
,5.2.0-0
,5.1.0-0
,5.0.2-0
,3.0.1-2
,3.0.1-1
,3.0.1-0
,2.1.0-5
,2.1.0-4
,2.1.0-3
,2.1.0-2
,2.1.0-1
,2.1.0-0
- Depends:
perl
>=5.32.1,<6.0a0 *_perl5
perl-db-file
perl-uri
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install transdecoder
and update with:
conda update transdecoder
or use the docker container:
docker pull quay.io/biocontainers/transdecoder:<tag>
(see transdecoder/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/transdecoder/README.html)