recipe transposcope

A package for visualizing read coverage in areas flanking mobile element insertions.

Homepage

https://github.com/FenyoLab/transposcope

License

MIT / MIT License

Recipe

/transposcope/meta.yaml

package transposcope

Versions

0.1.0-0

Depends

• biopython >=1.72

• bowtie2 >=2.3.4.3

• cherrypy >=18.1.0

• numpy >=1.15.2

• pandas >=0.23.4

• pysam >=0.15.0

• python >=3

• samtools >=1.9

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install transposcope

and update with:

conda update transposcope

or use the docker container:

docker pull quay.io/biocontainers/transposcope:<tag>

(see transposcope/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/transposcope/README.html)