recipe transposcope

A package for visualizing read coverage in areas flanking mobile element insertions.

Homepage:

https://github.com/FenyoLab/transposcope

License:

MIT / MIT License

Recipe:

/transposcope/meta.yaml

package transposcope

Versions:

2.0.1-0,  2.0.0-1,  2.0.0-0,  0.1.2-0,  0.1.0-0

Depends:

• biopython >=1.76

• bowtie2 >=2.3.5

• numpy >=1.17.4

• pandas >=0.25.1

• pysam >=0.15.3

• python >=3

• samtools >=1.10

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install transposcope

and update with:

conda update transposcope

or use the docker container:

docker pull quay.io/biocontainers/transposcope:<tag>

(see transposcope/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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