recipe transrate

Reference free quality assessment of de-novo transcriptome assemblies

Homepage

https://github.com/blahah/transrate/

License

MIT

Recipe

/transrate/meta.yaml

Links

doi: 10.1101/gr.196469.115

package transrate

Versions

1.0.3-0

Depends

• blast

• libgcc-ng >=7.3.0

• ruby >=2

• ruby >=2.6.5,<2.7.0a0

• salmon 0.6.*

• snap

• transrate-tools

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install transrate

and update with:

conda update transrate

or use the docker container:

docker pull quay.io/biocontainers/transrate:<tag>

(see transrate/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/transrate/README.html)