recipe trawler

Trawler is a motif discovery tool used to identify enriched motifs in a set of sequenced regions of DNA.

Homepage:

https://trawler.erc.monash.edu.au/help.html

License:

GPLv2

Recipe:

/trawler/meta.yaml

package trawler

versions:

2.0-4,  2.0-3,  2.0-2,  2.0-1,  2.0-0

depends ghostscript:

depends openjdk:

depends perl:

>=5.22

depends perl-algorithm-cluster:

depends perl-cgi:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install trawler

and update with::

   mamba update trawler

To create a new environment, run:

mamba create --name myenvname trawler

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/trawler:<tag>

(see `trawler/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/trawler/README.html)