recipe treemix

TreeMix is a method for inferring the patterns of population splits and mixtures in the history of a set of populations.

Homepage:

http://pritchardlab.stanford.edu/software.html

License:

GPL / GPLv3

Recipe:

/treemix/meta.yaml

Links:

biotools: TreeMix, doi: 10.1371/journal.pgen.1002967

package treemix

(downloads) docker_treemix

versions:
1.13-8,  1.13-7,  1.13-6,  1.13-5,  1.13-4,  1.13-3,  1.13-2,  1.13-1,  1.13-0, 

1.13-8,  1.13-7,  1.13-6,  1.13-5,  1.13-4,  1.13-3,  1.13-2,  1.13-1,  1.13-0,  1.12-3,  1.12-2,  1.12-1,  1.12-0

depends boost-cpp:

>=1.78.0,<1.78.1.0a0

depends gsl:

>=2.7,<2.8.0a0

depends libcblas:

>=3.9.0,<4.0a0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends r-base:

>=3.6

depends r-rcolorbrewer:

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install treemix

and update with::

   mamba update treemix

To create a new environment, run:

mamba create --name myenvname treemix

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/treemix:<tag>

(see `treemix/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/treemix/README.html)