recipe treesapp

TreeSAPP is a functional and taxonomic annotation tool for microbial genomes and proteins

Homepage

https://github.com/hallamlab/TreeSAPP

License

GPL3 / GPL-3.0-only

Recipe

/treesapp/meta.yaml

package treesapp

Versions

0.11.3-1,  0.11.3-0,  0.11.2-0,  0.11.0-0,  0.10.4-1,  0.10.4-0,  0.10.3-1,  0.10.3-0,  0.10.2-0, 

0.11.3-1,  0.11.3-0,  0.11.2-0,  0.11.0-0,  0.10.4-1,  0.10.4-0,  0.10.3-1,  0.10.3-0,  0.10.2-0,  0.10.1-0,  0.10.0-0,  0.9.8-0,  0.9.7-0,  0.9.6-1,  0.9.6-0,  0.9.5-0,  0.9.2-1,  0.9.2-0,  0.9.1-0,  0.9.0-0,  0.8.9-0,  0.6.8-1,  0.6.8-0,  0.6.7-0,  0.6.6-0,  0.6.5-0

Depends

• biopython >=1.78

• bwa >=0.7.17

• epa-ng >=0.3.8

• ete3 >=3.1.2

• fasttree >=2.1.10

• hmmer >=3.3

• joblib 1.0.0

• libgcc-ng >=10.3.0

• libstdcxx-ng >=10.3.0

• mafft >=7.471

• matplotlib-base >=3.3.0

• mmseqs2 >=12.113e3

• numpy >=1.18.1

• packaging >=20.4

• pandas >=1.1.0

• prodigal >=2.6.2

• pyfastx >=0.8.2

• pygtrie >=2.3.3

• python >=3.6,<3.7.0a0

• python_abi 3.6.* *_cp36m

• raxml-ng >=1.0.1

• samsum >=0.1.4

• scikit-learn 0.23.1

• scipy >=1.5.2

• seaborn >=0.11.0

• six >=1.15.0

• tqdm >=4.50.0

• vsearch >=2.15.0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install treesapp

and update with:

conda update treesapp

or use the docker container:

docker pull quay.io/biocontainers/treesapp:<tag>

(see treesapp/tags for valid values for <tag>)

Download stats

Link to this page

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