- recipe treesapp
TreeSAPP is a functional and taxonomic annotation tool for microbial genomes and proteins
- Homepage
- License
GPL3 / GPL-3.0-only
- Recipe
- package treesapp¶
-
- Versions
0.11.3-1
,0.11.3-0
,0.11.2-0
,0.11.0-0
,0.10.4-1
,0.10.4-0
,0.10.3-1
,0.10.3-0
,0.10.2-0
,0.11.3-1
,0.11.3-0
,0.11.2-0
,0.11.0-0
,0.10.4-1
,0.10.4-0
,0.10.3-1
,0.10.3-0
,0.10.2-0
,0.10.1-0
,0.10.0-0
,0.9.8-0
,0.9.7-0
,0.9.6-1
,0.9.6-0
,0.9.5-0
,0.9.2-1
,0.9.2-0
,0.9.1-0
,0.9.0-0
,0.8.9-0
,0.6.8-1
,0.6.8-0
,0.6.7-0
,0.6.6-0
,0.6.5-0
- Depends
biopython
>=1.78
bwa
>=0.7.17
epa-ng
>=0.3.8
ete3
>=3.1.2
fasttree
>=2.1.10
hmmer
>=3.3
joblib
1.0.0
libgcc-ng
>=10.3.0
libstdcxx-ng
>=10.3.0
mafft
>=7.471
matplotlib-base
>=3.3.0
mmseqs2
>=12.113e3
numpy
>=1.18.1
packaging
>=20.4
pandas
>=1.1.0
prodigal
>=2.6.2
pyfastx
>=0.8.2
pygtrie
>=2.3.3
python
>=3.6,<3.7.0a0
python_abi
3.6.* *_cp36m
raxml-ng
>=1.0.1
samsum
>=0.1.4
scikit-learn
0.23.1
scipy
>=1.5.2
seaborn
>=0.11.0
six
>=1.15.0
tqdm
>=4.50.0
vsearch
>=2.15.0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install treesapp
and update with:
conda update treesapp
or use the docker container:
docker pull quay.io/biocontainers/treesapp:<tag>
(see treesapp/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/treesapp/README.html)