recipe treesapp

TreeSAPP is a functional and taxonomic annotation tool for microbial genomes and proteins

Homepage

https://github.com/hallamlab/TreeSAPP

License

GPL3 / GNU General Public v3 (GPLv3)

Recipe

/treesapp/meta.yaml

package treesapp

Versions

0.6.8-0,  0.6.7-0,  0.6.6-0,  0.6.5-0

Depends

• biopython >=1.68

• bwa >=0.7.3

• ete3 >=3.1.1

• fasttree >=2.1.9

• hmmer >=3.1

• joblib >=0.14.1

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• mafft >=7.407

• matplotlib-base >=3.1.2

• numpy

• prodigal >=2.6.2

• pyfastx 0.6.10

• pygtrie >=2.3.2

• python >=3.6,<3.7.0a0

• python_abi 3.6.* *_cp36m

• raxml 8.2.12

• samsum 0.1.2

• scipy >=1.4.1

• seaborn >=0.9.0

• six >=1.14.0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install treesapp

and update with:

conda update treesapp

or use the docker container:

docker pull quay.io/biocontainers/treesapp:<tag>

(see treesapp/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/treesapp/README.html)