recipe trim-galore

Trim Galore! is a wrapper script to automate quality and adapter trimming as well as quality control

Homepage:

https://github.com/FelixKrueger/TrimGalore

License:

GPL / GPL

Recipe:

/trim-galore/meta.yaml

Links:

usegalaxy-eu: trim_galore

package trim-galore

Versions:

0.6.10-0,  0.6.9-0,  0.6.7-0,  0.6.6-1,  0.6.6-0,  0.6.5-0,  0.6.4-1,  0.6.4-0,  0.6.3-0, 

0.6.10-0,  0.6.9-0,  0.6.7-0,  0.6.6-1,  0.6.6-0,  0.6.5-0,  0.6.4-1,  0.6.4-0,  0.6.3-0,  0.6.2-0,  0.6.1-0,  0.5.0-0,  0.4.5-2,  0.4.5-1,  0.4.5-0,  0.4.4-0,  0.4.3-1,  0.4.3-0,  0.4.1-3,  0.4.1-2,  0.4.1-1,  0.4.1-0

Depends:

• cutadapt

• fastqc

• perl

Required By:

• riboraptor

• ngseqbasic

• metawrap-mg

• libis

• fargene

• capcruncher

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install trim-galore

and update with:

conda update trim-galore

or use the docker container:

docker pull quay.io/biocontainers/trim-galore:<tag>

(see trim-galore/tags for valid values for <tag>)

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