recipe trimmomatic

A flexible read trimming tool for Illumina NGS data

Homepage

http://www.usadellab.org/cms/?page=trimmomatic

License

GPLv3

Recipe

/trimmomatic/meta.yaml

Links

biotools: trimmomatic, doi: 10.1093/bioinformatics/btu170

package trimmomatic

(downloads) docker_trimmomatic

Versions

0.39-1, 0.39-0, 0.38-1, 0.38-0, 0.36-6, 0.36-5, 0.36-4, 0.36-3, 0.36-1, 0.35-4, 0.35-3, 0.35-2, 0.35-1, 0.33-2, 0.33-1, 0.33-0, 0.32-2, 0.32-1, 0.32-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install trimmomatic

and update with:

conda update trimmomatic

or use the docker container:

docker pull quay.io/biocontainers/trimmomatic:<tag>

(see trimmomatic/tags for valid values for <tag>)