recipe trinity

Trinity RNA-Seq de novo transcriptome assembly

Homepage

https://github.com/trinityrnaseq/trinityrnaseq/

License

BSD-3-Clause

Recipe

/trinity/meta.yaml

Links

biotools: trinity

package trinity

(downloads) docker_trinity

Versions

2.8.5-0, 2.8.4-1, 2.8.4-0, 2.8.3-0, 2.8.2-2, 2.8.2-1, 2.8.2-0, 2.6.6-2, 2.6.6-1, 2.6.6-0, 2.5.1-1, 2.5.1-0, 2.4.0-5, 2.4.0-4, 2.4.0-3, 2.3.2-2, 2.3.2-1, 2.3.2-0, 2.2.0-7, 2.2.0-6, 2.2.0-5, 2.2.0-4, 2.2.0-3, 2.2.0-2, 2.2.0-1, 2.2.0-0, 2.1.1-6, date.2011_11_26-8, date.2011_11_26-7, date.2011_11_26-6, date.2011_11_26-5, date.2011_11_26-4, date.2011_11_26-3

Depends bowtie

Depends bowtie2

>=2.3.0

Depends jellyfish

>=2.2.6

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends numpy

Depends openjdk

>=8

Depends perl

Depends python

Depends salmon

>=0.9.1

Depends samtools

>=1.3

Depends trimmomatic

>=0.36

Depends zlib

>=1.2.11,<1.3.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install trinity

and update with:

conda update trinity

or use the docker container:

docker pull quay.io/biocontainers/trinity:<tag>

(see trinity/tags for valid values for <tag>)