recipe trycycler

Trycycler is a tool for generating consensus long-read assemblies for bacterial genomes

Homepage:

https://github.com/rrwick/Trycycler

License:

GPLv3

Recipe:

/trycycler/meta.yaml

package trycycler

Versions:

0.5.4-0,  0.5.3-0,  0.5.1-0,  0.5.0-0,  0.4.2-0,  0.4.1-0,  0.3.1-0

Depends:

• mash

• miniasm

• minimap2

• muscle <4

• numpy

• pillow

• python >=3.6

• python-edlib

• r-ape

• r-base

• r-phangorn

• scipy

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install trycycler

and update with:

conda update trycycler

or use the docker container:

docker pull quay.io/biocontainers/trycycler:<tag>

(see trycycler/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/trycycler/README.html)