recipe twilight

TWILIGHT: A high throughput tool for tall and wide multiple sequence alignment.

Homepage:

https://github.com/TurakhiaLab/TWILIGHT

Documentation:

https://turakhia.ucsd.edu/TWILIGHT/

License:

MIT / MIT

Recipe:

/twilight/meta.yaml

TWILIGHT (Tall and Wide Alignments at High Throughput) is a tool designed for ultrafast and ultralarge multiple sequence alignment. It is able to scale to millions of long nucleotide sequences (>10000 bases).

package twilight

(downloads) docker_twilight

versions:

0.1.2-1,  0.1.2-0,  0.1.1-0

depends boost-cpp:

depends libgcc:

>=13

depends libstdcxx:

>=13

depends libzlib:

>=1.3.1,<2.0a0

depends protobuf:

depends tbb:

2019.3.*

depends tbb:

>=2019.3

depends tbb-devel:

2019.3.*

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install twilight

and update with::

   mamba update twilight

To create a new environment, run:

mamba create --name myenvname twilight

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/twilight:<tag>

(see `twilight/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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