recipe ucsc-expmatrixtobarchartbed

Generate a barChart bed6+5 file from a matrix, meta data, and coordinates.

Homepage:

http://hgdownload.cse.ucsc.edu/admin/exe/

License:

varies; see http://genome.ucsc.edu/license

Recipe:

/ucsc-expmatrixtobarchartbed/meta.yaml

package ucsc-expmatrixtobarchartbed

(downloads) docker_ucsc-expmatrixtobarchartbed

versions:

377-2377-1377-0366-0357-2357-1357-0

depends libpng:

depends libuuid:

depends mysql-connector-c:

depends openssl:

>=1.1.0,<=1.1.1

depends python:

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ucsc-expmatrixtobarchartbed

and update with::

   mamba update ucsc-expmatrixtobarchartbed

To create a new environment, run:

mamba create --name myenvname ucsc-expmatrixtobarchartbed

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/ucsc-expmatrixtobarchartbed:<tag>

(see `ucsc-expmatrixtobarchartbed/tags`_ for valid values for ``<tag>``)

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