recipe ucsc-fatovcf

Extract VCF from a multi-sequence FASTA alignment

Homepage

http://hgdownload.cse.ucsc.edu/admin/exe/

License

varies; see http://genome.ucsc.edu/license

Recipe

/ucsc-fatovcf/meta.yaml

package ucsc-fatovcf

Versions

426-0,  407-0

Depends

• libgcc-ng >=10.3.0

• libpng >=1.6.37,<1.7.0a0

• libstdcxx-ng >=10.3.0

• libuuid >=2.32.1,<3.0a0

• libzlib >=1.2.11,<1.3.0a0

• mysql-connector-c >=6.1.11,<6.1.12.0a0

• openssl >=1.1.1l,<1.1.2a

Required By

• usher

• pangolin

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install ucsc-fatovcf

and update with:

conda update ucsc-fatovcf

or use the docker container:

docker pull quay.io/biocontainers/ucsc-fatovcf:<tag>

(see ucsc-fatovcf/tags for valid values for <tag>)

Download stats

Link to this page

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