recipe ucsc-gff3togenepred

Convert a GFF3 file to a genePred file



varies; see



package ucsc-gff3togenepred

(downloads) docker_ucsc-gff3togenepred



depends libgcc-ng:


depends libpng:

depends libstdcxx-ng:


depends libuuid:

depends libzlib:


depends mysql-connector-c:


depends openssl:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ucsc-gff3togenepred

and update with::

   mamba update ucsc-gff3togenepred

To create a new environment, run:

mamba create --name myenvname ucsc-gff3togenepred

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `ucsc-gff3togenepred/tags`_ for valid values for ``<tag>``)

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