recipe ucsc-gtftogenepred

convert a GTF file to a genePred

Homepage:

http://hgdownload.cse.ucsc.edu/admin/exe/

License:

varies; see http://genome.ucsc.edu/license

Recipe:

/ucsc-gtftogenepred/meta.yaml

package ucsc-gtftogenepred

Versions:

377-5,  377-4,  377-3,  377-2,  377-1,  366-1,  366-0,  357-1,  357-0, 

377-5,  377-4,  377-3,  377-2,  377-1,  366-1,  366-0,  357-1,  357-0,  332-0,  324-0

Depends:

• libgcc-ng >=9.4.0

• libpng >=1.6.37,<1.7.0a0

• libuuid >=2.32.1,<3.0a0

• libzlib >=1.2.11,<1.3.0a0

• mysql-connector-c >=6.1.11,<6.1.12.0a0

• openssl >=1.1.1l,<1.1.2a

• zlib >=1.2.11,<1.3.0a0

Required By:

• squire

• circexplorer2

• makehub

• genomepy

• comparative-annotation-toolkit

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install ucsc-gtftogenepred

and update with:

conda update ucsc-gtftogenepred

or use the docker container:

docker pull quay.io/biocontainers/ucsc-gtftogenepred:<tag>

(see ucsc-gtftogenepred/tags for valid values for <tag>)

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