recipe ucsc-overlapselect

Select records based on overlapping chromosome ranges. The ranges are specified in the selectFile, with each block specifying a range. Records are copied from the inFile to outFile based on the selection criteria. Selection is based on blocks or exons rather than entire range.

Homepage

http://hgdownload.cse.ucsc.edu/admin/exe/

License

varies; see http://genome.ucsc.edu/license

Recipe

/ucsc-overlapselect/meta.yaml

package ucsc-overlapselect

(downloads) docker_ucsc-overlapselect

Versions

366-0, 357-2, 357-1, 357-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install ucsc-overlapselect

and update with:

conda update ucsc-overlapselect

or use the docker container:

docker pull quay.io/biocontainers/ucsc-overlapselect:<tag>

(see ucsc-overlapselect/tags for valid values for <tag>)