recipe ucsc-pslcdnafilter

Filter cDNA alignments in psl format. Filtering criteria are comparative, selecting near best in genome alignments for each given cDNA and non-comparative, based only on the quality of an individual alignment.

Homepage:

http://hgdownload.cse.ucsc.edu/admin/exe/

License:

varies; see http://genome.ucsc.edu/license

Recipe:

/ucsc-pslcdnafilter/meta.yaml

package ucsc-pslcdnafilter

Versions:

366-0,  357-2,  357-1,  357-0,  332-0,  324-0

Depends:

• libgcc-ng >=4.9

• libpng >=1.6.34,<1.7.0a0

• libuuid

• mysql-connector-c

• openssl >=1.0.2o,<1.0.3a

• zlib >=1.2.11,<1.3.0a0

Required By:

• funannotate

• comparative-annotation-toolkit

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install ucsc-pslcdnafilter

and update with:

conda update ucsc-pslcdnafilter

or use the docker container:

docker pull quay.io/biocontainers/ucsc-pslcdnafilter:<tag>

(see ucsc-pslcdnafilter/tags for valid values for <tag>)

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Link to this page

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