ucsc-pslcdnafilter

downloads

Filter cDNA alignments in psl format. Filtering criteria are comparative, selecting near best in genome alignments for each given cDNA and non-comparative, based only on the quality of an individual alignment.
Home http://hgdownload.cse.ucsc.edu/admin/exe/
Versions 324, 332
License varies; see http://genome.ucsc.edu/license
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/ucsc-pslcdnafilter

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install ucsc-pslcdnafilter

and update with:

conda update ucsc-pslcdnafilter

docker

A Docker container is available at https://quay.io/repository/biocontainers/ucsc-pslcdnafilter.