recipe ucsc-pslcdnafilter

Filter cDNA alignments in psl format. Filtering criteria are comparative, selecting near best in genome alignments for each given cDNA and non-comparative, based only on the quality of an individual alignment.

Homepage

http://hgdownload.cse.ucsc.edu/admin/exe/

License

varies; see http://genome.ucsc.edu/license

Recipe

/ucsc-pslcdnafilter/meta.yaml

package ucsc-pslcdnafilter

Versions

366-0, 357-2, 357-1, 357-0, 332-0, 324-0

Depends

• libgcc-ng >=4.9

• libpng >=1.6.34,<1.7.0a0

• libuuid

• mysql-connector-c

• openssl >=1.0.2o,<1.0.3a

• zlib >=1.2.11,<1.3.0a0

Required By

• funannotate

• comparative-annotation-toolkit

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install ucsc-pslcdnafilter

and update with:

conda update ucsc-pslcdnafilter

or use the docker container:

docker pull quay.io/biocontainers/ucsc-pslcdnafilter:<tag>

(see ucsc-pslcdnafilter/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ucsc-pslcdnafilter/README.html)