recipe unimap

Unimap is a fork of minimap2 optimized for assembly-to-reference alignment.

Homepage:

https://github.com/lh3/unimap

License:

MIT

Recipe:

/unimap/meta.yaml

Unimap is a fork of minimap2 optimized for assembly-to-reference alignment. It integrates the minigraph chaining algorithm and can align through long INDELs (up to 100kb by default) much faster than minimap2. Unimap is a better fit for resolving segmental duplications and is recommended over minimap2 for alignment between high-quality assemblies.

Unimap does not replace minimap2 for other types of alignment. It drops the support of multi-part index and short-read mapping. Its long-read alignment is different from minimap2 but is not necessarily better. Unimap is more of a specialized minimap2 at the moment.

package unimap

(downloads) docker_unimap

Versions:

0.1-2,  0.1-1,  0.1-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install unimap

and update with:

conda update unimap

or use the docker container:

docker pull quay.io/biocontainers/unimap:<tag>

(see unimap/tags for valid values for <tag>)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/unimap/README.html)