recipe uropa

UROPA (Universal RObust Peak Annotator) is a command line based tool, intended for genomic region annotation from e.g. peak calling. It detects the most appropriate annotation by taking parameters such as feature type, anchor, direction and strand into account. Furthermore, it allows filtering for GTF attribute values, e.g. protein_coding.

Homepage

https://github.com/loosolab/UROPA

Documentation

http://uropa-manual.readthedocs.io

License

MIT / MIT

Recipe

/uropa/meta.yaml

package uropa

Versions

4.0.2-0,  4.0.1-0,  4.0.0-0,  3.5.3-0,  3.5.2-0,  3.5.0-0,  3.4.0-0,  3.3.4-0,  3.3.3-0, 

4.0.2-0,  4.0.1-0,  4.0.0-0,  3.5.3-0,  3.5.2-0,  3.5.0-0,  3.4.0-0,  3.3.4-0,  3.3.3-0,  3.3.2-0,  3.3.0-0,  3.2.0-0,  3.1.0-0,  3.0.0-0,  2.0.3-0,  2.0.2a0-2,  2.0.2a0-0,  2.0.0a0-0,  1.2.1-0

Depends

• bioconductor-graph

• bioconductor-rbgl

• numpy

• psutil

• pysam >=0.15.3

• python >=3.6

• r-base

• r-getopt

• r-ggplot2

• r-gplots

• r-gridextra

• r-jsonlite

• r-tidyr

• r-upsetr

• r-venndiagram

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install uropa

and update with:

conda update uropa

or use the docker container:

docker pull quay.io/biocontainers/uropa:<tag>

(see uropa/tags for valid values for <tag>)

Download stats

Link to this page

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