recipe vadr

Viral Annotation DefineR - classification and annotation of viral sequences based on RefSeq annotation

Homepage:

https://github.com/ncbi/vadr

License:

Public Domain

Recipe:

/vadr/meta.yaml

package vadr

Versions:

1.5-1,  1.5-0,  1.4.2-0,  1.4.1-1,  1.4.1-0,  1.4-0,  1.3-4,  1.3-3,  1.3-2, 

1.5-1,  1.5-0,  1.4.2-0,  1.4.1-1,  1.4.1-0,  1.4-0,  1.3-4,  1.3-3,  1.3-2,  1.3-1,  1.3-0,  1.2.1-0

Depends:

• blast >=2.11.0

• easel >=0.48

• fasta3 36.3.8h.*

• hmmer >=3.3.2

• infernal >=1.1.4

• minimap2

• perl >=5.32.1,<6.0a0 *_perl5

• perl-bio-easel >=0.15

• perl-lwp-protocol-https >=6.07

• perl-lwp-simple

• perl-net-ssleay >=1.88

• sequip >=0.08

• wget

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install vadr

and update with:

conda update vadr

or use the docker container:

docker pull quay.io/biocontainers/vadr:<tag>

(see vadr/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/vadr/README.html)