recipe vadr

Viral Annotation DefineR - classification and annotation of viral sequences based on RefSeq annotation

Homepage:

https://github.com/ncbi/vadr

License:

Public Domain

Recipe:

/vadr/meta.yaml

package vadr

versions:

1.5.1-2,  1.5.1-1,  1.5.1-0,  1.5-1,  1.5-0,  1.4.2-0,  1.4.1-1,  1.4.1-0,  1.4-0, 

1.5.1-2,  1.5.1-1,  1.5.1-0,  1.5-1,  1.5-0,  1.4.2-0,  1.4.1-1,  1.4.1-0,  1.4-0,  1.3-4,  1.3-3,  1.3-2,  1.3-1,  1.3-0,  1.2.1-0

depends blast:

>=2.11.0

depends easel:

>=0.48

depends hmmer:

>=3.3.2

depends infernal:

>=1.1.4

depends libgcc-ng:

>=12

depends minimap2:

depends perl:

>=5.32.1,<5.33.0a0 *_perl5

depends perl-bio-easel:

>=0.16

depends perl-lwp-protocol-https:

>=6.07

depends perl-lwp-simple:

depends perl-net-ssleay:

>=1.88

depends sequip:

>=0.08

depends wget:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install vadr

and update with::

   mamba update vadr

To create a new environment, run:

mamba create --name myenvname vadr

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/vadr:<tag>

(see `vadr/tags`_ for valid values for ``<tag>``)

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Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/vadr/README.html)