recipe vadr

Viral Annotation DefineR - classification and annotation of viral sequences based on RefSeq annotation

Homepage

https://github.com/ncbi/vadr

License

Public Domain

Recipe

/vadr/meta.yaml

package vadr

Versions

1.4.1-0,  1.4-0,  1.3-4,  1.3-3,  1.3-2,  1.3-1,  1.3-0,  1.2.1-0

Depends

• blast 2.11.0.*

• easel 0.48.*

• fasta3 36.3.8.*

• hmmer 3.3.2.*

• infernal 1.1.4.*

• perl >=5.26.2,<5.26.3.0a0

• perl-bio-easel 0.15.*

• perl-lwp-protocol-https 6.07.*

• perl-lwp-simple

• sequip 0.08.*

• wget

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install vadr

and update with:

conda update vadr

or use the docker container:

docker pull quay.io/biocontainers/vadr:<tag>

(see vadr/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/vadr/README.html)