recipe vafator

VAFator annotates the variants in a VCF file with technical annotations extracted from one or more BAM alignment files. We implement a set of basic coverage annotations and also more sophisticated published annotations used to assess the quality of every variant call.

Homepage:

https://github.com/tron-bioinformatics/vafator

License:

MIT / MIT

Recipe:

/vafator/meta.yaml

Links:

doi: 10.5281/zenodo.6976425

package vafator

(downloads) docker_vafator

Versions:
2.1.0-02.0.3-02.0.2-02.0.1-01.3.2-01.3.1-01.3.0-01.2.6-01.2.5-0

2.1.0-02.0.3-02.0.2-02.0.1-01.3.2-01.3.1-01.3.0-01.2.6-01.2.5-01.2.4-01.1.4-01.1.2-01.1.0-00.4.0-00.3.4-00.3.3-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install vafator

and update with:

conda update vafator

or use the docker container:

docker pull quay.io/biocontainers/vafator:<tag>

(see vafator/tags for valid values for <tag>)

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