recipe vafator

Annotate a VCF file with AF, AD and DP from tumor and normal BAMs

Homepage:

https://github.com/tron-bioinformatics/vafator

License:

MIT / MIT

Recipe:

/vafator/meta.yaml

package vafator

Versions:

1.3.1-0,  1.3.0-0,  1.2.6-0,  1.2.5-0,  1.2.4-0,  1.1.4-0,  1.1.2-0,  1.1.0-0,  0.4.0-0, 

1.3.1-0,  1.3.0-0,  1.2.6-0,  1.2.5-0,  1.2.4-0,  1.1.4-0,  1.1.2-0,  1.1.0-0,  0.4.0-0,  0.3.4-0,  0.3.3-0

Depends:

• cyvcf2 0.30.11

• logzero 1.7.0

• pandas 1.3.3

• pybedtools 0.8.2

• pysam 0.17.0

• python 3.7.*

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install vafator

and update with:

conda update vafator

or use the docker container:

docker pull quay.io/biocontainers/vafator:<tag>

(see vafator/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/vafator/README.html)