recipe vcf-annotator

Use the reference GenBank file to add biological annotations to the variant calls in a VCF.






package vcf-annotator

(downloads) docker_vcf-annotator



depends biopython:

depends python:


depends pyvcf:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install vcf-annotator

and update with::

   mamba update vcf-annotator

To create a new environment, run:

mamba create --name myenvname vcf-annotator

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `vcf-annotator/tags`_ for valid values for ``<tag>``)

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