recipe vcf2db

Create a gemini-compatible database from a VCF

Homepage:

https://github.com/quinlan-lab/vcf2db

License:

MIT

Recipe:

/vcf2db/meta.yaml

package vcf2db

Versions:

2020.02.24-1,  2020.02.24-0,  2018.10.26-1,  2018.10.26-0,  2018.05.23-2,  2018.05.23-0,  2018.01.23-0,  2017.12.11-0,  2017.11.15-0, 

2020.02.24-1,  2020.02.24-0,  2018.10.26-1,  2018.10.26-0,  2018.05.23-2,  2018.05.23-0,  2018.01.23-0,  2017.12.11-0,  2017.11.15-0,  2017.10.11-0,  2017.09.14-0,  2017.04.12-0,  2017.03.01-0,  2017.02.25-0,  2017.02.24-1,  2017.02.24-0,  2017.01.10-0,  2016.12.09-1,  2016.12.09-0,  2016.11.08-0,  2016.04.29-0

Depends:

• cyvcf2

• geneimpacts >0.2.0

• nomkl

• numpy

• peddy >=0.2.9

• python

• python-snappy

• snappy

• sqlalchemy

Required By:

• oncogemini

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install vcf2db

and update with:

conda update vcf2db

or use the docker container:

docker pull quay.io/biocontainers/vcf2db:<tag>

(see vcf2db/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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