recipe vcf2db

Create a gemini-compatible database from a VCF

Homepage

https://github.com/quinlan-lab/vcf2db

License

MIT

Recipe

/vcf2db/meta.yaml

package vcf2db

Versions

2018.10.26-0, 2018.05.23-2, 2018.05.23-0, 2018.01.23-0, 2017.12.11-0, 2017.11.15-0, 2017.10.11-0, 2017.09.14-0, 2017.04.12-0, 2017.03.01-0, 2017.02.25-0, 2017.02.24-1, 2017.02.24-0, 2017.01.10-0, 2016.12.09-1, 2016.12.09-0, 2016.11.08-0, 2016.04.29-0

Depends

• cyvcf2

• geneimpacts >0.2.0

• nomkl

• numpy

• peddy >=0.2.9

• python >=2.7,<2.8.0a0

• python-snappy

• snappy >=1.1.7,<1.1.8.0a0

• sqlalchemy

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install vcf2db

and update with:

conda update vcf2db

or use the docker container:

docker pull quay.io/biocontainers/vcf2db:<tag>

(see vcf2db/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/vcf2db/README.html)