recipe vcf2maf

Convert a VCF into a MAF where each variant is annotated to only one of all possible gene isoforms

Homepage

https://github.com/mskcc/vcf2maf

License

Apache / Apache-2.0

Recipe

/vcf2maf/meta.yaml

package vcf2maf

(downloads) docker_vcf2maf

Versions
1.6.21-01.6.20-11.6.20-01.6.19-11.6.19-01.6.18-21.6.18-11.6.18-01.6.17-2

1.6.21-01.6.20-11.6.20-01.6.19-11.6.19-01.6.18-21.6.18-11.6.18-01.6.17-21.6.17-11.6.17-01.6.16-41.6.16-31.6.16-01.6.15-11.6.15-01.6.14-01.6.12-01.6.8-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install vcf2maf

and update with:

conda update vcf2maf

or use the docker container:

docker pull quay.io/biocontainers/vcf2maf:<tag>

(see vcf2maf/tags for valid values for <tag>)

Notes

This package installs only vcf2maf and does not integrate with the variant-effect-predictor (VEP). To do so, please follow the instructions at https://github.com/mskcc/vcf2maf/blob/master/README.md.

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